Prerequisites
SeqGI requires other software in order to function properly. You will need:
Download
Latest version to download:
=> SeqGI_V1.2.zip
=> testfiles.zip
SeqGI is distributed under the terms of the GNU General Public License. Older versions of the source code can be downloaded from the project webpage: http://sourceforge.net/projects/seqgi/files/.
What do I do next?
1) Follow the Quick Start Guide and you can start testing SeqGI right right away!
2) We recommend that you go through the content of this webpage (OGRe usage and GenomeIntervals2BED). You can find several interesting examples that might inspire you and that you might want to do!
SeqGI requires other software in order to function properly. You will need:
- Python itself; version 2.x (http://www.python.org/getit/)
- R (http://cran.r-project.org/). All R scripts were tested in R versions 2.15 and 3.0
Download
Latest version to download:
=> SeqGI_V1.2.zip
=> testfiles.zip
SeqGI is distributed under the terms of the GNU General Public License. Older versions of the source code can be downloaded from the project webpage: http://sourceforge.net/projects/seqgi/files/.
What do I do next?
1) Follow the Quick Start Guide and you can start testing SeqGI right right away!
2) We recommend that you go through the content of this webpage (OGRe usage and GenomeIntervals2BED). You can find several interesting examples that might inspire you and that you might want to do!
Instructions
to set up Python path
SeqGI calls Python interpreter to run OGRe.py, so for Windows and Unix OS, you must add the Python directory to your OS path. In Mac OS this is not needed because the installer handles the path details.
The path variable is named PATH in Unix or path in Windows (Unix is case-sensitive; Windows is not).
Setting path at Unix/Linux:
To add the Python directory to the path for a particular session in Unix:
Setting path at Windows:
To add the Python directory to the path for a particular session in Windows:
SeqGI calls Python interpreter to run OGRe.py, so for Windows and Unix OS, you must add the Python directory to your OS path. In Mac OS this is not needed because the installer handles the path details.
The path variable is named PATH in Unix or path in Windows (Unix is case-sensitive; Windows is not).
Setting path at Unix/Linux:
To add the Python directory to the path for a particular session in Unix:
- In the csh shell: type
setenv PATH "$PATH:/usr/local/bin/python" and press Enter. - In the bash shell (Linux): type
export PATH="$PATH:/usr/local/bin/python" and press Enter. - In the sh or ksh shell: type
PATH="$PATH:/usr/local/bin/python" and press Enter.
Setting path at Windows:
To add the Python directory to the path for a particular session in Windows:
- At a command prompt : type
path %path%;C:\Python27 and press Enter.